![]() The bioconda channel is a Conda channel providing bioinformatics related packages for Linux and Mac OS. Looking through the packages it is clear there it already contains a number of chemistry packages. ![]() These include:īioconda offers a collection of over 3100 software tools, which are continuously maintained, updated, and extended by a growing global community of more than 330 contributors. Rather than try to duplicate this effort for a "Chemconda" it seems more efficient to encourage chemists to contribute to Bioconda. If you do package a chemistry application for Bioconda please let me know and I'll publicise it on my blog and add it to the list above. To start things rolling I've added PubChem.py to Bioconda and I've written a page describing how to create a bioconda recipe.īioconda is a channel for the conda package manager specializing in bioinformatics software.īioconda supports only 64-bit Linux and Mac OSX.īioconda offers a collection of over 2900 software tools, which are continuously maintained, updated, and extended by a growing global community of more than 250 contributors. #Clc sequence viewer color code selected residue how to Bioconda improves analysis reproducibility by allowing users to define isolated environments with defined software versions, all of which are easily installed and managed without administrative privileges. You can read more details in this publication "Bioconda: A sustainable and comprehensive software distribution for the life sciences", doi. Packages can then be installed using conda install cnvkit Whilst there are a number of compilaions of Bioinformatics software, Bioconda looks to be by far the most comprehensive.Īfter installing Conda, the first step is to set up the Bioconda channel conda config -add channels conda-forge #Clc sequence viewer color code selected residue software #Clc sequence viewer color code selected residue install This installs CNVkit plus the appropriate Python and R dependencies. Whilst there are many sites that track the compatibility on common desktop applications, it is often difficult to find out information about scientific applications. I’ll update the list regularly and feel free to send in information. #Clc sequence viewer color code selected residue update When I compiled a similar lists for Yosemite and El Capitan they proved very popular with 13,000 page views, I hope this page is similarly useful.īBEdit version 11.6.2 and newer are compatible, recommend against using earlier versionsīrainsight requires version 2.3.3 for full compatibility with 10.12 Sierra. #Clc sequence viewer color code selected residue full You could note too that 2.0 through 2.2.x will never work because 10.12 removed support for garbage collected applications.
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